标签: install.packages

对于像doMC和doSMP这样的一些软件包,我会收到警告和无法访问库(doMC).如下图所示,我对subselect没有问题,因此没有文件/目录权限问题.还试过repo = http://cran.us.r-project.org和其他人,没有运气.请指教.

ps:对于意想不到的日文字符,我不知道; 我认为这是一个可分离的问题; 尚未得到support.rstudio.org/help/discussions/problems/6009-japanese-characters-show-unexpectedly的回复

> install.packages('doMC')
Warning in install.packages :
  package ?oMC?is not available (for R version 3.0.0)
Installing package into ?:/Users/YULE/Documents/R/win-library/3.0?(as ?ib?is unspecified)
Warning in install.packages :
  package ?oMC?is not available (for R version 3.0.0)
> install.packages('subselect')
Installing package into ?:/Users/YULE/Documents/R/win-library/3.0?(as ?ib?is unspecified)
trying URL 'http://cran.rstudio.com/bin/windows/contrib/3.0/subselect_0.12-2.zip'
Content type 'application/zip' length 1295653 bytes (1.2 Mb)
opened URL
downloaded 1.2 Mb

package ?ubselect?successfully unpacked and MD5 sums checked

The downloaded binary packages are in
    C:\Users\YULE\AppData\Local\Temp\Rtmp6DK5mn\downloaded_packages
> library(subselect)
--------------------------------------------------------------------------------- …

实际上我正在尝试离线安装软件包.我有R工作室.我所做的是基于先前提出的问题如下:

install.packages(C:/Users/Desktop/class_7.3-12.zip", repos = NULL)

我得到了标题中提到的错误.有人在那里给我一个建议吗？

谢谢

我正在尝试R从CRAN存储库安装一个包.我必须在配置阶段传递一个标志,但我无法弄清楚如何在以下位置执行此操作install.packages:

> install.packages("Rmpfr")

..........
checking mpfr.h usability... no
checking mpfr.h presence... no
checking for mpfr.h... no
configure: error: Header file mpfr.h not found;
**maybe use --with-mpfr-include=INCLUDE_PATH**

(注意:我在自定义位置安装了MPFR,因为我不是root用户).

但是如何将带有参数的特定标志传递给install.package命令R？ .eg"--with-mpfr-include =/path/to/mpfr/include"

基于install.packages手册页,我尝试过:

install.packages("Rmpfr" , INSTALL_opts = "--with-mpfr-include=/path/to/mpfr/include")

install.packages("Rmpfr" , configure.args = "--with-mpfr-include=/path/to/mpfr/include")

install.packages("Rmpfr" , configure.vars = "--with-mpfr-include=/path/to/mpfr/include")

但是没有一个工作,同样的错误.

我无法在没有管理权限且无法访问互联网的Windows 7计算机上安装解压缩的软件包.我正在使用RGui(不是RStudio).

现在我有一个解压缩的库坐在目录中.不幸的是,当我尝试:

install.packages("C://path//to//directory", 
    repos = NULL, 
    lib = "C://path//to//newDirectory")

我收到错误:

Warning in `install.packages("C://path//to//directory",`   :
   'lib = "C://path//to//newDirectory"' is not writable

这很奇怪,因为我对我试图存储包的位置有写权限.

当我收到此错误时,我也会从RGui获得一个弹出窗口:

Would you like to use a personal library instead?

如果我点击Yes,它会抛出错误:

Error in `install.packages("C://path//to//directory",`   :
    type == "both" cannot be used with 'repos = NULL'

我也无法安装devtools.有任何想法吗？

我想知道我当前的库中有多少个软件包是从GitHub安装的，但是找不到解决方法

# The number of installed packages in my library
length(.packages(all.available=TRUE))
[1] 145

这篇R-bloggers帖子显示了软件包的版本，但未显示从https://www.r-bloggers.com/list-of-user-installed-r-packages-and-their-versions/安装的位置。

ip <- as.data.frame(installed.packages()[, c(1, 3:4)])
rownames(ip) <- NULL
ip <- ip[is.na(ip$Priority), 1:2, drop=FALSE]
print(ip, row.names=FALSE)

              Package     Version
                abind       1.4-5
              acepack       1.4.1
                 ade4      1.7-10
            albersusa       0.3.0
        AnnotationDbi      1.40.0
          ansistrings       1.0.0
                  ape         5.0
                  aqp        1.15
                  ash      1.0-15
           assertthat       0.2.0
                astsa         1.8
                ATmet         1.2
              automap      1.0-14
            backports       1.1.2
               base64         2.0
            base64enc       0.1-3
                bazar       1.0.6
               BBmisc        1.11
             beeswarm       0.2.3
                   BH    1.66.0-1

我以为我可以加载所有软件包，然后运行devtools::session_info()以查找我想要的东西 https://www.r-bloggers.com/loading-all-installed-r-packages/

lapply(.packages(all.available=TRUE), 
        function(x) library(x, …

我使用 RStudio，昨天我将 R 更新为以下版本：

R version 4.0.0 (2020-04-24) -- "Arbor Day"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

现在，我无法连接到任何 CRAN 镜像（我已经尝试了 4 个不同的镜像）或安装软件包。当我启动 RStudio 时，我在启动时收到以下错误：

Error in tools::startDynamicHelp() : internet routines cannot be loaded
Warning: namespace ‘lme4’ is not available and has been replaced
by .GlobalEnv when processing object ‘lmer1’
Warning: namespace ‘ggplot2’ is not available and has been replaced
by .GlobalEnv when processing object ‘plot1’
Warning: namespace ‘emmeans’ is not available and has been …

我无法在R中加载汽车包.我尝试重新安装使用

install.packages("car",dependencies=TRUE)

来自R和RStudio.我尝试quantreg按照另一篇文章中的建议进行安装,然后重新安装.安装似乎是成功的,但根本无法加载程序.

这是完整的错误:

loadNamespace出错(j < - i [[1L]],c(lib.loc,.libPaths()),versionCheck = vI [[j]]):没有名为'pbkrtest'的包
另外:警告信息:包'car'是在R版本3.2.3下构建的.
错误:'car'的包或命名空间加载失败

我尝试按照此指南在Amazon Linux实例上通过Rstudio Server安装软件包“ data.table”（和“ aws.s3”）：http ://stanke.co/category/r/

不幸的是，我收到以下错误消息。我真的不知道该怎么办。

有人可以帮忙吗？我安装了devtools，并且能够安装其他软件包，例如xml2，devtools和deplyr。

我正在尝试安装 CRAN 群体遗传学包hierfstat；但是 libproj.so.13 打印出以下错误：

> install.packages("hierfstat")\nInstalling package into \xe2\x80\x98/home/ecoevo/R/x86_64-pc-linux-gnu-library/3.6\xe2\x80\x99\n(as \xe2\x80\x98lib\xe2\x80\x99 is unspecified)\ntrying URL \'https://cloud.r-project.org/src/contrib/hierfstat_0.04-22.tar.gz\'\nContent type \'application/x-gzip\' length 460778 bytes (449 KB)\n==================================================\ndownloaded 449 KB\n\n* installing *source* package \xe2\x80\x98hierfstat\xe2\x80\x99 ...\n** package \xe2\x80\x98hierfstat\xe2\x80\x99 successfully unpacked and MD5 sums checked\n** using staged installation\n** R\n** data\n** inst\n** byte-compile and prepare package for lazy loading\nError in dyn.load(file, DLLpath = DLLpath, ...) : \n  unable to load shared object \'/home/ecoevo/R/x86_64-pc-linux-gnu-library/3.6/sf/libs/sf.so\':\n  libproj.so.13: cannot open shared object file: No such file or directory\nCalls: <Anonymous> ... …

我在新笔记本电脑（在 MacOS Catalina 上运行）上下载了旧的存储库，并尝试运行 R 脚本。

该存储库有一个 renv 锁定文件 - 这意味着，我应该能够按原样恢复所有依赖项。

但当我运行该renv::restore()命令时，出现以下错误消息：

Installing pbapply [1.4-3] ...\n    OK [linked cache]\nInstalling mvtnorm [1.1-2] ...\n    FAILED\nError installing package \'mvtnorm\':\n===================================\n\n* installing to library \xe2\x80\x98~/renv/staging/2\xe2\x80\x99\n* installing *source* package \xe2\x80\x98mvtnorm\xe2\x80\x99 ...\n** package \xe2\x80\x98mvtnorm\xe2\x80\x99 successfully unpacked and MD5 sums checked\n** libs\nclang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c C_FORTRAN_interface.c -o C_FORTRAN_interface.o\nclang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c miwa.c -o miwa.o\ngfortran   -fPIC  -g -O2  -c mvt.f -o mvt.o\nclang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG …