int Sequence::scoreDegeneracy()
{
cout << "Score Degeneracy" << name << seqLen << endl;
int f = 0;
if (degenComputed == false)
{
char _2foldTest = '*';
char _4foldTest = '*';
int aaseqLen = seqLen/3;
int i = 0;
for (i; i < aaseqLen; i++)
{
_4foldTest = is4FoldDegenerateSite(i);
_2foldTest = is2FoldDegenerateSite(i,_4foldTest);
degScores.totalCodons++
if (_2foldTest != '*')
{
degScores.totalCodons_2fold++;
if (_2foldTest == 'A')
{
degScores.total_2fold_A++;
}
else if (_2foldTest == 'T')
{
degScores.total_2fold_T++;
}
else if (_2foldTest == 'G')
{
degScores.total_2fold_G++; …Run Code Online (Sandbox Code Playgroud) c++ ×1