hdf5/h5py ImportError:libhdf5.so.7

Question

我正在研究一个涉及RHEL 6.3(x86_64)系统上的网络消息队列(msgpack,zmq,...)的项目.我正在安装最新的glib,gevent,pygobject,pygtk等软件包,以便让pylab/matplotlib工作(这也没有成功).

放弃后我回到我的代码,不知怎的,我设法破坏了我的hdf5/h5py安装 - h5py在导入时无法找到libhdf5.so.7.我立即在RHEL 6.3(x86_64)上的/ usr/local/hdf5中重新安装了hdf5-1.8.9,如下所示:

./configure --prefix=/usr/local/hdf5
make
make check
sudo make install
make check install

这似乎工作得很好.然后我去重新安装h5py(在python 2.7.3中):

python2.7 setup.py build --hdf5=/usr/local/hdf5/
python2.7 setup.py test   # optional
# sudo python2.7 setup.py install

无法在测试中导入_errors文件,如下所示:

======================================================================
ERROR: _hl.tests.test_attrs_data (unittest.loader.ModuleImportFailure)
----------------------------------------------------------------------
ImportError: Failed to import test module: _hl.tests.test_attrs_data
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/unittest/loader.py", line 252, in _find_tests
    module = self._get_module_from_name(name)
  File "/usr/local/lib/python2.7/unittest/loader.py", line 230, in _get_module_from_name
    __import__(name)
  File "/home/cronburg/Downloads/h5py-2.0.1/build/lib.linux-x86_64-2.7/h5py/_hl/tests/test_attrs_data.py", line 5, in <module>
    import h5py
  File "/home/cronburg/Downloads/h5py-2.0.1/build/lib.linux-x86_64-2.7/h5py/__init__.py", line 1, in <module>
    from h5py import _errors
ImportError: libhdf5.so.7: cannot open shared object file: No such file or directory


----------------------------------------------------------------------
Ran 12 tests in 0.001s

FAILED (errors=12)

在我安装上述软件包/ tarball之前,h5py工作正常,我不记得触摸任何远程看起来像hdf5的东西.有任何想法吗？

编辑:试图找到该文件只显示它在我解开它的位置:

cronburg@rhel:~/Downloads/h5py-2.0.1$ locate libhdf5.so.7
/home/cronburg/tmp/hdf5-1.8.9/hdf5/lib/libhdf5.so.7
/home/cronburg/tmp/hdf5-1.8.9/hdf5/lib/libhdf5.so.7.0.3
/home/cronburg/tmp/hdf5-1.8.9/src/.libs/libhdf5.so.7
/home/cronburg/tmp/hdf5-1.8.9/src/.libs/libhdf5.so.7.0.3

Answer 1

看一下： http://rpm.pbone.net/index.php3/stat/3/srodzaj/1/search/libhdf5.so.7()(64位)

或者应该尝试这个仓库： https: //ius.io/Packages/

我更喜欢始终以包格式使用最新的 python 版本。

https://dl.iuscommunity.org/pub/ius/stable/Redhat/6/x86_64/repoview/python27.html

sudo yum install -y https://centos6.iuscommunity.org/ius-release.rpm
sudo yum install -y python27
sudo yum install -y python27-devel

做一个pip install并快乐：

$ sudo pip install h5py
Installing collected packages: h5py
Successfully installed h5py-2.6.0