R可以做些什么来处理凌乱的数据格式?

Rui*_*das 41 r dataframe

有时我看到Stack Overflow问题中发布的数据格式与此问题类似.这不是第一次,所以我决定提出一个问题,然后用一种方法回答问题,使发布的数据变得可口.

我将在此处发布数据集示例,以防问题被删除.

+------------+------+------+----------+--------------------------+
|    Date    | Emp1 | Case | Priority | PriorityCountinLast7days |
+------------+------+------+----------+--------------------------+
| 2018-06-01 | A    | A1   |        0 |                        0 |
| 2018-06-03 | A    | A2   |        0 |                        1 |
| 2018-06-03 | A    | A3   |        0 |                        2 |
| 2018-06-03 | A    | A4   |        1 |                        1 |
| 2018-06-03 | A    | A5   |        2 |                        1 |
| 2018-06-04 | A    | A6   |        0 |                        3 |
| 2018-06-01 | B    | B1   |        0 |                        1 |
| 2018-06-02 | B    | B2   |        0 |                        2 |
| 2018-06-03 | B    | B3   |        0 |                        3 |
+------------+------+------+----------+--------------------------+
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正如您所看到的,这不是发布数据的正确方法.当用户在评论中写道,

它必须花费一些时间来按照您在此处显示的方式格式化数据.不幸的是,这不是我们复制和粘贴的好格式.

我相信这说明了一切.提问者很有意思,并且需要一些工作和时间来尝试变得更好,但结果并不好.

R代码可以做什么来使该表可用,如果有的话?会不会有很多麻烦?

dww*_*dww 28

使用data.table::fread:

x = '
+------------+------+------+----------+--------------------------+
|    Date    | Emp1 | Case | Priority | PriorityCountinLast7days |
+------------+------+------+----------+--------------------------+
| 2018-06-01 | A    | A1   |        0 |                        0 |
| 2018-06-03 | A    | A2   |        0 |                        1 |
| 2018-06-03 | A    | A3   |        0 |                        2 |
| 2018-06-03 | A    | A4   |        1 |                        1 |
| 2018-06-03 | A    | A5   |        2 |                        1 |
| 2018-06-04 | A    | A6   |        0 |                        3 |
| 2018-06-01 | B    | B1   |        0 |                        1 |
| 2018-06-02 | B    | B2   |        0 |                        2 |
| 2018-06-03 | B    | B3   |        0 |                        3 |
+------------+------+------+----------+--------------------------+
'

fread(gsub('\\+.+\\n' ,'', x, perl = T), drop=c(1,7))

#          Date Emp1 Case Priority PriorityCountinLast7days
# 1: 2018-06-01    A   A1        0                        0
# 2: 2018-06-03    A   A2        0                        1
# 3: 2018-06-03    A   A3        0                        2
# 4: 2018-06-03    A   A4        1                        1
# 5: 2018-06-03    A   A5        2                        1
# 6: 2018-06-04    A   A6        0                        3
# 7: 2018-06-01    B   B1        0                        1
# 8: 2018-06-02    B   B2        0                        2
# 9: 2018-06-03    B   B3        0                        3
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该gsub部分删除水平规则. drop删除由行末端的分隔符引起的额外列.


Rui*_*das 21

对问题的简短回答是肯定的,R代码可以解决这个问题,不会,它不会带来太多麻烦.

复制&粘贴表成R会话之后的第一个步骤是读取它在read.table设置header,sep,comment.char和strip.white参数.

提醒我参与的信用comment.char并strip.white转到@nicola,以及他的评论.

dat <- read.table(text = "
+------------+------+------+----------+--------------------------+
|    Date    | Emp1 | Case | Priority | PriorityCountinLast7days |
+------------+------+------+----------+--------------------------+
| 2018-06-01 | A    | A1   |        0 |                        0 |
| 2018-06-03 | A    | A2   |        0 |                        1 |
| 2018-06-03 | A    | A3   |        0 |                        2 |
| 2018-06-03 | A    | A4   |        1 |                        1 |
| 2018-06-03 | A    | A5   |        2 |                        1 |
| 2018-06-04 | A    | A6   |        0 |                        3 |
| 2018-06-01 | B    | B1   |        0 |                        1 |
| 2018-06-02 | B    | B2   |        0 |                        2 |
| 2018-06-03 | B    | B3   |        0 |                        3 |
+------------+------+------+----------+--------------------------+
", header = TRUE, sep = "|", comment.char = "+", strip.white = TRUE)
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但正如您所看到的,结果存在一些问题.

dat
   X       Date Emp1 Case Priority PriorityCountinLast7days X.1
1 NA 2018-06-01    A   A1        0                        0  NA
2 NA 2018-06-03    A   A2        0                        1  NA
3 NA 2018-06-03    A   A3        0                        2  NA
4 NA 2018-06-03    A   A4        1                        1  NA
5 NA 2018-06-03    A   A5        2                        1  NA
6 NA 2018-06-04    A   A6        0                        3  NA
7 NA 2018-06-01    B   B1        0                        1  NA
8 NA 2018-06-02    B   B2        0                        2  NA
9 NA 2018-06-03    B   B3        0                        3  NA
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为了让分隔符开始和结束每个数据行,R相信那些分隔符标记了额外的列,这不是原始问题OP的含义.

所以第二步是只保留真正的列.我将按照数字对列进行子集化,轻松完成,它们通常是第一列和最后一列.

dat <- dat[-c(1, ncol(dat))]
dat
          Date   Emp1   Case Priority PriorityCountinLast7days
1  2018-06-01   A      A1           0                        0
2  2018-06-03   A      A2           0                        1
3  2018-06-03   A      A3           0                        2
4  2018-06-03   A      A4           1                        1
5  2018-06-03   A      A5           2                        1
6  2018-06-04   A      A6           0                        3
7  2018-06-01   B      B1           0                        1
8  2018-06-02   B      B2           0                        2
9  2018-06-03   B      B3           0                        3
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这不是太难,更好.
在这种情况下,仍然存在一个问题,即强制列Date到类Date.

dat$Date <- as.Date(dat$Date)
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结果令人满意.

str(dat)
'data.frame':   9 obs. of  5 variables:
 $ Date                    : Date, format: "2018-06-01" "2018-06-03" ...
 $ Emp1                    : Factor w/ 2 levels "A","B": 1 1 1 1 1 1 2 2 2
 $ Case                    : Factor w/ 9 levels "A1","A2","A3",..: 1 2 3 4 5 6 7 8 9
 $ Priority                : int  0 0 0 1 2 0 0 0 0
 $ PriorityCountinLast7days: int  0 1 2 1 1 3 1 2 3
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请注意,我没有设置或多或少的标准参数stringsAsFactors = FALSE.如果需要,这应该在运行时完成read.table.

整个过程只需3行基本R代码.

最后,dput格式的最终结果,就像它应该在第一位.

dat <-
structure(list(Date = structure(c(17683, 17685, 17685, 17685, 
17685, 17686, 17683, 17684, 17685), class = "Date"), Emp1 = c("A", 
"A", "A", "A", "A", "A", "B", "B", "B"), Case = c("A1", "A2", 
"A3", "A4", "A5", "A6", "B1", "B2", "B3"), Priority = c(0, 0, 
0, 1, 2, 0, 0, 0, 0), PriorityCountinLast7days = c(0, 1, 2, 1, 
1, 3, 1, 2, 3)), row.names = c(NA, -9L), class = "data.frame")
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Aks*_*elA 11

问题不在于需要多少行代码,两行或五行,差别不大。问题更多的是它是否会超出您在此处发布的示例。

我还没有在野外遇到过这种事情,但是我尝试构建了另一个我认为可能存在的示例。


从那以后,我又遇到了几个案例并将它们添加到测试套件中。

我还包含了一个使用方框图字符绘制的表格。这些天你不会遇到这么多,但为了完整起见,它在这里。

x1 <- "
+------------+------+------+----------+--------------------------+
|    Date    | Emp1 | Case | Priority | PriorityCountinLast7days |
+------------+------+------+----------+--------------------------+
| 2018-06-01 | A    | A1   |        0 |                        0 |
| 2018-06-03 | A    | A2   |        0 |                        1 |
| 2018-06-02 | B    | B2   |        0 |                        2 |
| 2018-06-03 | B    | B3   |        0 |                        3 |
+------------+------+------+----------+--------------------------+
"

x2 <- "
––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––
    Date    | Emp1 | Case | Priority | PriorityCountinLast7days 
––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––
 2018-06-01 | A    | A|1  |        0 |                        0 
 2018-06-03 | A    | A|2  |        0 |                        1 
 2018-06-02 | B    | B|2  |        0 |                        2 
 2018-06-03 | B    | B|3  |        0 |                        3 
––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––
"

x3 <- "
 Maths | English | Science | History | Class

  0.1  |  0.2    |  0.3    |  0.2    |  Y2

  0.9  |  0.5    |  0.7    |  0.4    |  Y1

  0.2  |  0.4    |  0.6    |  0.2    |  Y2

  0.9  |  0.5    |  0.2    |  0.7    |  Y1
"

x4 <- "
       Season   |   Team  | W | AHWO
-------------------------------------
1  |  2017/2018 |  TeamA  | 2 | 1.75
2  |  2017/2018 |  TeamB  | 1 | 1.85
3  |  2017/2018 |  TeamC  | 1 | 1.70
4  |  2016/2017 |  TeamA  | 1 | 1.49
5  |  2016/2017 |  TeamB  | 3 | 1.51
6  |  2016/2017 |  TeamC  | 2 | N/A
"

x5 <- "
    A   B   C
  ?????????????
A ? 5 ? 1 ? 4 ?
  ?????????????
B ? 2 ? 5 ? 3 ?
  ?????????????
C ? 3 ? 4 ? 4 ?
  ?????????????
"

x6 <- "
------------------------------------------------------------
|date              |Material          |Description         |
|----------------------------------------------------------|
|10/04/2013        |WM.5597394        |PNEUMATIC           |
|11/07/2013        |GB.D040790        |RING                |
------------------------------------------------------------
------------------------------------------------------------
|date              |Material          |Description         |
|----------------------------------------------------------|
|08/06/2013        |WM.4M01004A05     |TOUCHEUR            |
|08/06/2013        |WM.4M010108-1     |LEVER               |
------------------------------------------------------------
"
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我去参加一个活动

f <- function(x=x6, header=TRUE, rem.dup.header=header, 
  na.strings=c("NA", "N/A"), stringsAsFactors=FALSE, ...) {

    # read each row as a character string
    x <- scan(text=x, what="character", sep="\n", quiet=TRUE)

    # keep only lines containing alphanumerics
    x <- x[grep("[[:alnum:]]", x)]

    # remove vertical bars with trailing or leading space
    x <- gsub("\\|? | \\|?", " ", x)

    # remove vertical bars at beginning and end of string
    x <- gsub("\\|?$|^\\|?", "", x)

    # remove vertical box-drawing characters
    x <- gsub("\U2502|\U2503|\U2505|\U2507|\U250A|\U250B", " ", x)

    if (rem.dup.header) {
        dup.header <- x == x[1]
        dup.header[1] <- FALSE
        x <- x[!dup.header]
    }

    # read the result as a table
    read.table(text=paste(x, collapse="\n"), header=header, 
      na.strings=na.strings, stringsAsFactors=stringsAsFactors, ...)    
}


lapply(c(x1, x2, x3, x4, x5, x6), f)
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输出

[[1]]
        Date Emp1 Case Priority PriorityCountinLast7days
1 2018-06-01    A   A1        0                        0
2 2018-06-03    A   A2        0                        1
3 2018-06-02    B   B2        0                        2
4 2018-06-03    B   B3        0                        3

[[2]]
        Date Emp1 Case Priority PriorityCountinLast7days
1 2018-06-01    A  A|1        0                        0
2 2018-06-03    A  A|2        0                        1
3 2018-06-02    B  B|2        0                        2
4 2018-06-03    B  B|3        0                        3

[[3]]
  Maths English Science History Class
1   0.1     0.2     0.3     0.2    Y2
2   0.9     0.5     0.7     0.4    Y1
3   0.2     0.4     0.6     0.2    Y2
4   0.9     0.5     0.2     0.7    Y1

[[4]]
     Season  Team W AHWO
1 2017/2018 TeamA 2 1.75
2 2017/2018 TeamB 1 1.85
3 2017/2018 TeamC 1 1.70
4 2016/2017 TeamA 1 1.49
5 2016/2017 TeamB 3 1.51
6 2016/2017 TeamC 2   NA

[[5]]
  A B C
A 5 1 4
B 2 5 3
C 3 4 4

[[6]]
        date      Material Description
1 10/04/2013    WM.5597394   PNEUMATIC
2 11/07/2013    GB.D040790        RING
3 08/06/2013 WM.4M01004A05    TOUCHEUR
4 08/06/2013 WM.4M010108-1       LEVER
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x3 来自此处(必须查看编辑历史记录)。
x4 来自这里
x6 来自这里


李哲源*_*李哲源 5

md_table <- scan(text = "
+------------+------+------+----------+--------------------------+
|    Date    | Emp1 | Case | Priority | PriorityCountinLast7days |
+------------+------+------+----------+--------------------------+
| 2018-06-01 | A    | A1   |        0 |                        0 |
| 2018-06-03 | A    | A2   |        0 |                        1 |
| 2018-06-03 | A    | A3   |        0 |                        2 |
| 2018-06-03 | A    | A4   |        1 |                        1 |
| 2018-06-03 | A    | A5   |        2 |                        1 |
| 2018-06-04 | A    | A6   |        0 |                        3 |
| 2018-06-01 | B    | B1   |        0 |                        1 |
| 2018-06-02 | B    | B2   |        0 |                        2 |
| 2018-06-03 | B    | B3   |        0 |                        3 |
+------------+------+------+----------+--------------------------+",
what = "", sep = "", comment.char = "+", quiet = TRUE)

## it is clear that there are 5 columns
mat <- matrix(md_table[md_table != "|"], ncol = 5, byrow = TRUE)
#      [,1]         [,2]   [,3]   [,4]       [,5]                      
# [1,] "Date"       "Emp1" "Case" "Priority" "PriorityCountinLast7days"
# [2,] "2018-06-01" "A"    "A1"   "0"        "0"                       
# [3,] "2018-06-03" "A"    "A2"   "0"        "1"                       
# [4,] "2018-06-03" "A"    "A3"   "0"        "2"                       
# [5,] "2018-06-03" "A"    "A4"   "1"        "1"                       
# [6,] "2018-06-03" "A"    "A5"   "2"        "1"                       
# [7,] "2018-06-04" "A"    "A6"   "0"        "3"                       
# [8,] "2018-06-01" "B"    "B1"   "0"        "1"                       
# [9,] "2018-06-02" "B"    "B2"   "0"        "2"                       
#[10,] "2018-06-03" "B"    "B3"   "0"        "3"
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## a data frame with all character columns
dat <- setNames(data.frame(mat[-1, ], stringsAsFactors = FALSE), mat[1, ])
#        Date Emp1 Case Priority PriorityCountinLast7days
#1 2018-06-01    A   A1        0                        0
#2 2018-06-03    A   A2        0                        1
#3 2018-06-03    A   A3        0                        2
#4 2018-06-03    A   A4        1                        1
#5 2018-06-03    A   A5        2                        1
#6 2018-06-04    A   A6        0                        3
#7 2018-06-01    B   B1        0                        1
#8 2018-06-02    B   B2        0                        2
#9 2018-06-03    B   B3        0                        3
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## or maybe just use `type.convert` on some columns?
dat[] <- lapply(dat, type.convert)
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