Bio*_*Bio 26 python heatmap seaborn
我用seaborn创建了一个热图
df1.index = pd.to_datetime(df1.index)
df1 = df1.set_index('TIMESTAMP')
df1 = df1.resample('30min').mean()
ax = sns.heatmap(df1.iloc[:, 1:6:], annot=True, linewidths=.5)
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但问题是,当数据帧中有大量数据时,热图太小而且内部的值开始不清楚,如附图中所示.
编辑
我尝试:
df1.index = pd.to_datetime(df1.index)
fig, ax = plt.subplots(figsize=(10,10)) # Sample figsize in inches
sns.heatmap(df1.iloc[:, 1:6:], annot=True, linewidths=.5, ax=ax)
df1 = df1.set_index('TIMESTAMP')
df1 = df1.resample('1d').mean()
ax = sns.heatmap(df1.iloc[:, 1:6:], annot=True, linewidths=.5)
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但我得到这个错误:
KeyError Traceback (most recent call last)
C:\Users\Demonstrator\Anaconda3\lib\site-packages\pandas\indexes\base.py in get_loc(self, key, method, tolerance)
1944 try:
-> 1945 return self._engine.get_loc(key)
1946 except KeyError:
pandas\index.pyx in pandas.index.IndexEngine.get_loc (pandas\index.c:4154)()
pandas\index.pyx in pandas.index.IndexEngine.get_loc (pandas\index.c:4018)()
pandas\hashtable.pyx in pandas.hashtable.PyObjectHashTable.get_item (pandas\hashtable.c:12368)()
pandas\hashtable.pyx in pandas.hashtable.PyObjectHashTable.get_item (pandas\hashtable.c:12322)()
KeyError: 'TIMESTAMP'
During handling of the above exception, another exception occurred:
KeyError Traceback (most recent call last)
<ipython-input-779-acaf05718dd8> in <module>()
2 fig, ax = plt.subplots(figsize=(10,10)) # Sample figsize in inches
3 sns.heatmap(df1.iloc[:, 1:6:], annot=True, linewidths=.5, ax=ax)
----> 4 df1 = df1.set_index('TIMESTAMP')
5 df1 = df1.resample('1d').mean()
6 ax = sns.heatmap(df1.iloc[:, 1:6:], annot=True, linewidths=.5)
C:\Users\Demonstrator\Anaconda3\lib\site-packages\pandas\core\frame.py in set_index(self, keys, drop, append, inplace, verify_integrity)
2835 names.append(None)
2836 else:
-> 2837 level = frame[col]._values
2838 names.append(col)
2839 if drop:
C:\Users\Demonstrator\Anaconda3\lib\site-packages\pandas\core\frame.py in __getitem__(self, key)
1995 return self._getitem_multilevel(key)
1996 else:
-> 1997 return self._getitem_column(key)
1998
1999 def _getitem_column(self, key):
C:\Users\Demonstrator\Anaconda3\lib\site-packages\pandas\core\frame.py in _getitem_column(self, key)
2002 # get column
2003 if self.columns.is_unique:
-> 2004 return self._get_item_cache(key)
2005
2006 # duplicate columns & possible reduce dimensionality
C:\Users\Demonstrator\Anaconda3\lib\site-packages\pandas\core\generic.py in _get_item_cache(self, item)
1348 res = cache.get(item)
1349 if res is None:
-> 1350 values = self._data.get(item)
1351 res = self._box_item_values(item, values)
1352 cache[item] = res
C:\Users\Demonstrator\Anaconda3\lib\site-packages\pandas\core\internals.py in get(self, item, fastpath)
3288
3289 if not isnull(item):
-> 3290 loc = self.items.get_loc(item)
3291 else:
3292 indexer = np.arange(len(self.items))[isnull(self.items)]
C:\Users\Demonstrator\Anaconda3\lib\site-packages\pandas\indexes\base.py in get_loc(self, key, method, tolerance)
1945 return self._engine.get_loc(key)
1946 except KeyError:
-> 1947 return self._engine.get_loc(self._maybe_cast_indexer(key))
1948
1949 indexer = self.get_indexer([key], method=method, tolerance=tolerance)
pandas\index.pyx in pandas.index.IndexEngine.get_loc (pandas\index.c:4154)()
pandas\index.pyx in pandas.index.IndexEngine.get_loc (pandas\index.c:4018)()
pandas\hashtable.pyx in pandas.hashtable.PyObjectHashTable.get_item (pandas\hashtable.c:12368)()
pandas\hashtable.pyx in pandas.hashtable.PyObjectHashTable.get_item (pandas\hashtable.c:12322)()
KeyError: 'TIMESTAMP'
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编辑
TypeError Traceback (most recent call last)
<ipython-input-890-86bff697504a> in <module>()
2 df2.resample('30min').mean()
3 fig, ax = plt.subplots()
----> 4 ax = sns.heatmap(df2.iloc[:, 1:6:], annot=True, linewidths=.5)
5 ax.set_yticklabels([i.strftime("%Y-%m-%d %H:%M:%S") for i in df2.index], rotation=0)
C:\Users\Demonstrator\Anaconda3\lib\site-packages\seaborn\matrix.py in heatmap(data, vmin, vmax, cmap, center, robust, annot, fmt, annot_kws, linewidths, linecolor, cbar, cbar_kws, cbar_ax, square, ax, xticklabels, yticklabels, mask, **kwargs)
483 plotter = _HeatMapper(data, vmin, vmax, cmap, center, robust, annot, fmt,
484 annot_kws, cbar, cbar_kws, xticklabels,
--> 485 yticklabels, mask)
486
487 # Add the pcolormesh kwargs here
C:\Users\Demonstrator\Anaconda3\lib\site-packages\seaborn\matrix.py in __init__(self, data, vmin, vmax, cmap, center, robust, annot, fmt, annot_kws, cbar, cbar_kws, xticklabels, yticklabels, mask)
165 # Determine good default values for the colormapping
166 self._determine_cmap_params(plot_data, vmin, vmax,
--> 167 cmap, center, robust)
168
169 # Sort out the annotations
C:\Users\Demonstrator\Anaconda3\lib\site-packages\seaborn\matrix.py in _determine_cmap_params(self, plot_data, vmin, vmax, cmap, center, robust)
202 cmap, center, robust):
203 """Use some heuristics to set good defaults for colorbar and range."""
--> 204 calc_data = plot_data.data[~np.isnan(plot_data.data)]
205 if vmin is None:
206 vmin = np.percentile(calc_data, 2) if robust else calc_data.min()
TypeError: ufunc 'isnan' not supported for the input types, and the inputs could not be safely coerced to any supported types according to the casting rule ''safe''
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Nic*_*eli 54
你可以figsize通过tuple显示width, height你想要保留的参数来改变它.
import matplotlib.pyplot as plt
fig, ax = plt.subplots(figsize=(10,10)) # Sample figsize in inches
sns.heatmap(df1.iloc[:, 1:6:], annot=True, linewidths=.5, ax=ax)
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编辑
我记得回答你的类似问题,你必须将索引设置为TIMESTAMP.那么,您可以执行以下操作:
df = df.set_index('TIMESTAMP')
df.resample('30min').mean()
fig, ax = plt.subplots()
ax = sns.heatmap(df.iloc[:, 1:6:], annot=True, linewidths=.5)
ax.set_yticklabels([i.strftime("%Y-%m-%d %H:%M:%S") for i in df.index], rotation=0)
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对于head您发布的数据帧,情节看起来像:
小智 21
plt.figure(figsize=(16,5))在sns.heatmap之前添加并使用figsize数字,直到获得所需的大小
...
plt.figure(figsize = (16,5))
ax = sns.heatmap(df1.iloc[:, 1:6:], annot=True, linewidths=.5)
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