我需要为R版本3.1.2安装rvest包(2014-10-31)
我收到这些错误:
checking whether the C++ compiler supports the long long type... no
*** stringi cannot be built. Upgrade your C++ compiler's settings
ERROR: configuration failed for package ‘stringi’
* removing ‘/usr/local/lib64/R/library/stringi’
ERROR: dependency ‘stringi’ is not available for package ‘stringr’
* removing ‘/usr/local/lib64/R/library/stringr’
ERROR: dependency ‘stringr’ is not available for package ‘httr’
* removing ‘/usr/local/lib64/R/library/httr’
ERROR: dependency ‘stringr’ is not available for package ‘selectr’
* removing ‘/usr/local/lib64/R/library/selectr’
ERROR: dependencies ‘httr’, ‘selectr’ are not available for package ‘rvest’
* removing ‘/usr/local/lib64/R/library/rvest’
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任何想法我怎么能安装R包rvest?
小智 25
我的系统是Ubuntu 14.04,R:3.2.3,我遇到了同样的问题.
然后我检查了err meg并尝试安装libcurl4-openssl-dev和libxml2-dev的库:
sudo apt-get install libcurl4-openssl-dev
sudo apt-get install libxml2-dev
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安装后,install.packages("rvest")成功了.
我需要依赖项,例如Rcurl, XML, rvest, xml2,当我尝试tidyverse, DESeq2, RUVSeq在全新安装的 Ubuntu 18.04 上安装Rstudio 版本 1.1.456 时。无论如何,有一堆缺少的依赖项。这个答案可能更适合作为 Ubuntu 18.04 的评论,但我没有那么多声誉。所以只是想在这里总结一下适用于 Ubuntu 18.04 的解决方案。
在终端中,运行:
sudo apt-get install libcurl4-openssl-dev libssl-dev
sudo apt-get install libxml2-dev
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然后在 Rstudio 中,
install.packages("xml2")
install.packages("rvest")
install.packages("tidyverse") # might need other dependencies installed in Rstudio
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明白了tidyverse!
在终端:
sudo apt-get install libmysqlclient-dev ## for RMySQL
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然后在Rstudio内
source("https://bioconductor.org/biocLite.R")
biocLite("DESeq2")
biocLite('RUVSeq') ## might have messages as following
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installation path not writeable, unable to update packages: cluster, foreign, MASS, Matrix, mgcv, nlme, survival
在终端:
sudo R ## give R the root permission
## in the R session within the terminal
pks <- c('cluster', 'foreign', 'MASS', 'Matrix', 'mgcv', 'nlme', 'survival')
install.packages(pks)
q()
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这是我自己的经历。希望这个有很好的泛化性。
我能够构建 stringi 包,如下所示:
install.packages('stringi', configure.args='--disable-cxx11')
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