相关疑难解决方法(0)

我使用R中的topGO包来分析基因富集,使用以下代码:

sampleGOdata <- new("topGOdata", description = "Simple session", ontology = "BP",
                    allGenes = geneList, geneSel = topDiffGenes, nodeSize = 10, 
                    annot = annFUN.db, affyLib = affyLib)
resultFisher <- runTest(sampleGOdata, algorithm = "classic", statistic = "fisher")
allRes <- GenTable(sampleGOdata, classicFisher = resultFisher, orderBy = "fisher", 
                   ranksOf = "classicFisher",topNodes = 10)

我想看到和更改的RunTest功能和GenTable更改的功能ResultTable,但我不知道如何表达的功能.随着getAnywhere("GenTable")我没有得到我想要的硬代码.

getAnywhere("GenTable")

找到了匹配"GenTable"的单个对象

它在以下地方被发现

package:topGO

namespace:topGO

Run Code Online (Sandbox Code Playgroud)

有价值的

function (object, ...)
standardGeneric("GenTable")
<environment: 0x16a30c10>
attr(,"generic")
[1] "GenTable"
attr(,"generic")attr(,"package")
[1] "topGO"
attr(,"package")
[1] "topGO"
attr(,"group") …

Run Code Online (Sandbox Code Playgroud)