Github 操作失败：安装 R-CMD-Check 的系统依赖项时进程已完成，退出代码为 1

Question

我正在尝试use_github_action_check_standard()从usethisR 包运行命令，以在 GitHub Actions 上的每次推送中检查我的包。

\n

该测试在 Windows 和 MacOS 上运行没有问题，但对于这两个 Linux 版本，我的工作流程代码甚至在到达包代码之前就失败了。

\n

当它尝试安装系统依赖项时失败，它给了我错误##[error]Process completed with exit code 1。

\n

当我查看原始日志（如下）时，我注意到这一行：\n Cache not found for input keys: Linux-287c850eb370edd647ed85b6fac18cbaee02effa7d01b981304dce84a452b22c-1-, Linux--1-.\n但是我担心我不理解该错误。另外，我不认为是这样，因为密钥已经出现在上面的组中（注意 ），##[endgroup]但错误仅出现在下一组中（如屏幕截图所示）。

\n

有任何想法吗？非常感谢！

\n

我还在下面发布了我的整个工作流程代码。

\n

截屏

\n

\n

原始日志

\n

2020-08-12T22:21:55.5243116Z ##[group]Run install.packages(\'remotes\')\n2020-08-12T22:21:55.5243360Z [36;1minstall.packages(\'remotes\')[0m\n2020-08-12T22:21:55.5243487Z [36;1msaveRDS(remotes::dev_package_deps(dependencies = TRUE), "../.github/depends.Rds", version = 2)[0m\n2020-08-12T22:21:55.5243834Z [36;1mwriteLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), "../.github/R-version")[0m\n2020-08-12T22:21:55.5250702Z shell: /usr/local/bin/Rscript {0}\n2020-08-12T22:21:55.5251247Z env:\n2020-08-12T22:21:55.5251370Z   R_REMOTES_NO_ERRORS_FROM_WARNINGS: true\n2020-08-12T22:21:55.5251571Z   RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest\n2020-08-12T22:21:55.5251726Z   R_LIBS_USER: /home/runner/work/_temp/Library\n2020-08-12T22:21:55.5251838Z   TZ: UTC\n2020-08-12T22:21:55.5251944Z   NOT_CRAN: true\n2020-08-12T22:21:55.5252036Z ##[endgroup]\n2020-08-12T22:21:55.7245517Z Installing package into \xe2\x80\x98/home/runner/work/_temp/Library\xe2\x80\x99\n2020-08-12T22:21:55.7246358Z (as \xe2\x80\x98lib\xe2\x80\x99 is unspecified)\n2020-08-12T22:22:10.8252493Z trying URL \'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/remotes_2.2.0.tar.gz\'\n2020-08-12T22:22:11.4785067Z Content type \'binary/octet-stream\' length 385906 bytes (376 KB)\n2020-08-12T22:22:11.4972702Z ==================================================\n2020-08-12T22:22:11.4973457Z downloaded 376 KB\n2020-08-12T22:22:11.4973749Z \n2020-08-12T22:22:11.7705424Z * installing *binary* package \xe2\x80\x98remotes\xe2\x80\x99 ...\n2020-08-12T22:22:11.7751638Z * DONE (remotes)\n2020-08-12T22:22:11.7952384Z \n2020-08-12T22:22:11.7953131Z The downloaded source packages are in\n2020-08-12T22:22:11.7954176Z    \xe2\x80\x98/tmp/RtmpnMfdtp/downloaded_packages\xe2\x80\x99\n2020-08-12T22:22:28.2516191Z ##[group]Run actions/cache@v1\n2020-08-12T22:22:28.2516310Z with:\n2020-08-12T22:22:28.2516416Z   path: /home/runner/work/_temp/Library\n2020-08-12T22:22:28.2516545Z   key: Linux-287c850eb370edd647ed85b6fac18cbaee02effa7d01b981304dce84a452b22c-1-\n2020-08-12T22:22:28.2516663Z   restore-keys: Linux--1-\n2020-08-12T22:22:28.2516765Z env:\n2020-08-12T22:22:28.2516865Z   R_REMOTES_NO_ERRORS_FROM_WARNINGS: true\n2020-08-12T22:22:28.2517041Z   RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest\n2020-08-12T22:22:28.2517180Z   R_LIBS_USER: /home/runner/work/_temp/Library\n2020-08-12T22:22:28.2517288Z   TZ: UTC\n2020-08-12T22:22:28.2517383Z   NOT_CRAN: true\n2020-08-12T22:22:28.2517481Z ##[endgroup]\n2020-08-12T22:22:28.3670558Z Cache not found for input keys: Linux-287c850eb370edd647ed85b6fac18cbaee02effa7d01b981304dce84a452b22c-1-, Linux--1-.\n2020-08-12T22:22:28.3750527Z ##[group]Run while read -r cmd\n2020-08-12T22:22:28.3750930Z [36;1mwhile read -r cmd[0m\n2020-08-12T22:22:28.3751045Z [36;1mdo[0m\n2020-08-12T22:22:28.3751155Z [36;1m  eval sudo $cmd[0m\n2020-08-12T22:22:28.3751285Z [36;1mdone < <(Rscript -e \'cat(remotes::system_requirements("ubuntu", "20.04"), sep = "\\n")\')[0m\n2020-08-12T22:22:28.3792540Z shell: /usr/bin/bash -e {0}\n2020-08-12T22:22:28.3792673Z env:\n2020-08-12T22:22:28.3792794Z   R_REMOTES_NO_ERRORS_FROM_WARNINGS: true\n2020-08-12T22:22:28.3792990Z   RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest\n2020-08-12T22:22:28.3793151Z   R_LIBS_USER: /home/runner/work/_temp/Library\n2020-08-12T22:22:28.3793268Z   TZ: UTC\n2020-08-12T22:22:28.3793377Z   NOT_CRAN: true\n2020-08-12T22:22:28.3793480Z ##[endgroup]\n2020-08-12T22:22:29.0943838Z usage: sudo -h | -K | -k | -V\n2020-08-12T22:22:29.0944936Z usage: sudo -v [-AknS] [-g group] [-h host] [-p prompt] [-u user]\n2020-08-12T22:22:29.0945856Z usage: sudo -l [-AknS] [-g group] [-h host] [-p prompt] [-U user] [-u user]\n2020-08-12T22:22:29.0946223Z             [command]\n2020-08-12T22:22:29.0947040Z usage: sudo [-AbEHknPS] [-r role] [-t type] [-C num] [-g group] [-h host] [-p\n2020-08-12T22:22:29.0947710Z             prompt] [-T timeout] [-u user] [VAR=value] [-i|-s] [<command>]\n2020-08-12T22:22:29.0948381Z usage: sudo -e [-AknS] [-r role] [-t type] [-C num] [-g group] [-h host] [-p\n2020-08-12T22:22:29.0948992Z             prompt] [-T timeout] [-u user] file ...\n2020-08-12T22:22:29.0956330Z ##[error]Process completed with exit code 1.\n

\n

工作流程代码：

\n

# For help debugging build failures open an issue on the RStudio community with the \'github-actions\' tag.\n# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions\non:\n  push:\n    branches:\n      - master\n  pull_request:\n    branches:\n      - master\n\nname: R-CMD-check\n\njobs:\n  R-CMD-check:\n    runs-on: ${{ matrix.config.os }}\n\n    name: ${{ matrix.config.os }} (${{ matrix.config.r }})\n\n    strategy:\n      fail-fast: false\n      matrix:\n        config:\n          - {os: windows-latest, r: \'release\'}\n          - {os: macOS-latest, r: \'release\'}\n          - {os: ubuntu-20.04, r: \'release\', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}\n          - {os: ubuntu-20.04, r: \'devel\', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}\n\n    env:\n      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true\n      RSPM: ${{ matrix.config.rspm }}\n    \n   defaults:\n      run:\n        working-directory: myfunctionname\n    steps:\n      - uses: actions/checkout@v2\n\n      - uses: r-lib/actions/setup-r@master\n        with:\n          r-version: ${{ matrix.config.r }}\n\n      - uses: r-lib/actions/setup-pandoc@master\n\n      - name: Query dependencies\n        run: |\n          install.packages(\'remotes\')\n          saveRDS(remotes::dev_package_deps(dependencies = TRUE), "../.github/depends.Rds", version = 2)\n          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), "../.github/R-version")\n        shell: Rscript {0}\n\n      - name: Cache R packages\n        if: runner.os != \'Windows\'\n        uses: actions/cache@v1\n        with:\n          path: ${{ env.R_LIBS_USER }}\n          key: ${{ runner.os }}-${{ hashFiles(\'.github/R-version\') }}-1-${{ hashFiles(\'../.github/depends.Rds\') }}\n          restore-keys: ${{ runner.os }}-${{ hashFiles(\'../.github/R-version\') }}-1-\n\n      - name: Install system dependencies\n        if: runner.os == \'Linux\'\n        run: |\n          while read -r cmd\n          do\n            eval sudo $cmd\n          done < <(Rscript -e \'cat(remotes::system_requirements("ubuntu", "20.04"), sep = "\\n")\')\n      - name: Install dependencies\n        run: |\n          remotes::install_deps(dependencies = TRUE)\n          remotes::install_cran("rcmdcheck")\n        shell: Rscript {0}\n\n      - name: Check\n        env:\n          _R_CHECK_CRAN_INCOMING_REMOTE_: false\n        run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")\n        shell: Rscript {0}\n\n      - name: Upload check results\n        if: failure()\n        uses: actions/upload-artifact@main\n        with:\n          name: ${{ runner.os }}-r${{ matrix.config.r }}-results\n          path: check\n

\n

Answer 1

我最终弄清楚了，但将其留在这里，因为它可能对其他人有用！

该错误与命令中的 R 代码相关，因此如果您也遇到这种情况，请重点关注代码的 R 部分，而不是工作流程代码。

run: |
   while read -r cmd
        do
          eval sudo $cmd
        done < <(Rscript -e 'cat(remotes::system_requirements("ubuntu", "20.04"), sep = "\n")')

我的包位于我的 GitHub 帐户的子目录中myfunctionname，正如我在上面的工作目录中指定的那样：

defaults:
      run:
        working-directory: myfunctionname

这意味着 R 函数remotes::system_requirements("ubuntu", "20.04")无法在指定文件夹中找到包。一旦我简单地添加了信息： remotes::system_requirements("ubuntu", "20.04","myfunctionname")一切正常。