从原始 VTK (.vtu) 文件中读取数据

Question

我想使用 Python VTK 模块从 .vtu 文件中提取数据数组。文件看起来像这样（文件末尾的原始数据被省略）：

<?xml version="1.0"?>
<VTKFile type="UnstructuredGrid" version="0.1" byte_order="LittleEndian">
  <UnstructuredGrid>
    <Piece NumberOfPoints="10471" NumberOfCells="64892">
      <PointData>
        <DataArray type="Float64" Name="potential" NumberOfComponents="1" format="appended" offset="0"/>
        <DataArray type="Float64" Name="electric field" NumberOfComponents="3" format="appended" offset="83772"/>
      </PointData>
      <CellData>
        <DataArray type="Int32" Name="GeometryIds" format="appended" offset="335080"/>
      </CellData>
      <Points>
        <DataArray type="Float64" NumberOfComponents="3" format="appended" offset="594652"/>
      </Points>
      <Cells>
        <DataArray type="Int32" Name="connectivity" format="appended" offset="845960"/>
        <DataArray type="Int32" Name="offsets" format="appended" offset="1865068"/>
        <DataArray type="Int32" Name="types" format="appended" offset="2124640"/>
      </Cells>
    </Piece>
  </UnstructuredGrid>
<AppendedData encoding="raw">

我尝试使用以下 python 代码提取数据：

import numpy
from vtk import vtkUnstructuredGridReader
from vtk.util import numpy_support as VN

reader = vtkUnstructuredGridReader()
reader.SetFileName("charged_wire.vtu")
reader.ReadAllVectorsOn()
reader.ReadAllScalarsOn()
reader.Update()

data = reader.GetOutput()
potential = data.GetPointData().GetScalars("potential")

print(type(potential))

不幸的是，这个程序打印NoneType为输出，我不确定我需要更改什么才能提取potential数组中的数据存储？

Answer 1

您没有使用正确的阅读器，这是一个.vtu文件，您必须使用vtkXMLUnstructuredGridReader.

import vtk.vtk

# The source file
file_name = "path/to/your/file.vtu"

# Read the source file.
reader = vtk.vtkXMLUnstructuredGridReader()
reader.SetFileName(file_name)
reader.Update()  # Needed because of GetScalarRange
output = reader.GetOutput()
potential = output.GetPointData().GetArray("potential")

Answer 2

A more lightweight solution would be to use meshio (which I authored). It has no required dependencies except numpy. Install with

pip install meshio

and read the file with

pip install meshio