Ros*_*seS 5 r function r-caret
我“更新”了插入符号中的twoClassSummary 函数,以使用插入符号函数包含阴性和阳性预测值:
testfun <- function (data, lev = NULL, model = NULL)
{
lvls <- levels(data$obs)
if (length(lvls) > 2)
stop(paste("Your outcome has", length(lvls), "levels. The
twoClassSummary() function isn't appropriate."))
requireNamespaceQuietStop("ModelMetrics")
if (!all(levels(data[, "pred"]) == lvls))
stop("levels of observed and predicted data do not match")
data$y = as.numeric(data$obs == lvls[2])
rocAUC <- ModelMetrics::auc(ifelse(data$obs == lev[2], 0,
1), data[, lvls[1]])
out <- c(rocAUC, sensitivity(data[, "pred"], data[, "obs"], lev[1]),
specificity(data[, "pred"], data[, "obs"], lev[2]),
# next 3 lines are my additions and modifications
negPredValue(data[, "obs"], data[, "pred"], lev[2]),
posPredValue(data[, "obs"], data[, "pred"], lev[1]))
names(out) <- c("ROC", "Sens", "Spec", "NPV", "PPV")
out
}
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然后是我的 trainControl 函数:
train_control <- trainControl(method = 'repeatedcv',
number = 10, repeats = 3,
summaryFunction = testfun,
classProbs = T,
savePredictions = T)
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然后是我的模型函数:
modelSvm <- train(target ~ ., data = twoClassData, trControl = train_control, method = 'svmRadial')
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问题是当我运行此函数时,出现错误 Error in ctrl$summaryFunction(testOutput, lev, method) : Could not find function "requireNamespaceQuietStop"
即使我没有改变这部分功能。
如果我输入
twoClassSummary
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在控制台中,
环境:命名空间:插入符
出现在函数定义之后的末尾(在 < > 符号之间),我相信这是我的问题的根源。
1)如何在函数中将 R 定向到该环境?2)准确性不是预定义的插入符号函数,关于如何将准确性纳入此代码的任何建议?
提前致谢....